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Artificial Life

Artificial Life

Early Access
Posted Online February 22, 2012.
(doi:10.1162/artl_a_00056)
© Massachusetts Institute of Technology

Evolvable Physical Self-Replicators

Nathaniel Virgo**,

Max Planck Institute for Biogeochemistry

University of Sussex

Chrisantha Fernando*,†,‡,§

University of Sussex

Queen Mary, University of London

MRC National Institute for Medical Research

Bill Bigge

University of Sussex

Phil Husbands

University of Sussex

*Contact author.

**Max Planck Institute for Biogeochemistry, 07745 Jena, Germany.

†Department of Informatics, University of Sussex, Falmer, Brighton BN1 9RH, UK. E-mail:

‡School of Electronic Engineering and Computer Science, Queen Mary, University of London, Mile End Road, London E1 4NS, UK.

§MRC National Institute for Medical Research, London NW7 1AA, UK.

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Abstract

Building an evolvable physical self-replicating machine is a grand challenge. The main problem is that the device must be capable of hereditary variation, that is, replicating in many configurations—configurations into which it enters unpredictably by mutation. Template replication is the solution found by nature. A scalable device must also be capable of miniaturization, and so have few or no moving and electronic parts. Here a significant step towards this goal is presented in the form of a physical template replicator made from small plastic pieces containing embedded magnets that float on an air-hockey-type table and undergo stochastic motion. Our units replicate by a process analogous to the replication of DNA, except without the involvement of enzymes. Building a physical rather than a computational model forces us to confront several problems that have analogues on the nano scale. In particular, replication must be maintained by preventing side reactions such as spontaneous ligation, cyclization, product inhibition, and elongation at staggered ends. The last of these results in ever-lengthening sequences in a process known as the elongation catastrophe. The extreme specificity of structure required by the monomers is indirect evidence that some kind of natural selection took place prior to the existence of nucleotide analogues during the origin of life.

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